September 2025

Launch the next era of proteomics

Introducing the Illumina Protein Prep, a highly accurate, scalable and streamlined sample-to-insights next-generation sequencing (NGS) based proteomics assay. This innovative solution enables large-scale proteogenomics studies to improve our understanding of disease and accelerate drug discovery.

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What milestone achievement happened 25 years ago in the world of genomics?

25 years of the Human Genome Project

In this edition of The Naked Scientists Podcast, we look at 25 years of the Human Genome Project.
What is it? And what has it achieved?

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High-accuracy methylation profiling with less sequencing. Curious to understand how it works?

The Illumina 5-base solution delivers both methylation and variant data in a fast and highly accurate workflow.

Foundational to the 5-base solution are the highly optimized Illumina DRAGEN algorithms which distinguish 5mC from C>T SNVs. Read the article to learn in detail how the 5-base solution works.

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Innovations to enable multiomics

1

Cell atlasing human intestine using Illumina spatial technology

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Cell atlasing human intestine using Illumina spatial technology

Want to learn more about the power of Spatial Biology?
Watch the presentation by Chenchen Zhu from Stanford University; he dives into how Illumina spatial technology is helping build detailed cell atlases of human tissues. It’s a great example of how spatial biology is pushing the boundaries of what’s possible in research.

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2

AI Tool Identifies Disease-Driving Promoter Mutations

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AI Tool Identifies Disease-Driving Promoter Mutations

Using genomic data from tens of thousands of individuals, scientists at Illumina have developed a deep neural network that can predict how changes in promoter sequences will affect gene expression. Published in Science, the PromoterAI tool accurately identifies promoter variants that dysregulate gene expression. More details in this interview with Kyle Farh, Vice President at Illumina Artificial Intelligence Lab. 

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Multiomics in action

Publication highlights from the research community

Proteomics

Epigenomics

Genomics

Proteomic signatures improve risk prediction for common and rare diseases

Published in Nature Medicine, researchers analyzed plasma proteomic data from UK Biobank samples to assess whether sparse protein signatures could improve prediction incidence for common and rare diseases. They found that for 67 diseases—including multiple myeloma, non-Hodgkin lymphoma, pulmonary fibrosis, and celiac disease—protein-based models significantly outperformed traditional clinical models. The study highlights the potential of plasma proteomics to enable earlier diagnosis and targeted screening to enhance precision medicine.

Learn more about Illumina Protein Prep

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Proteomics

Epigenomics

Genomics

Scalable screening of ternary-code DNA methylation dynamics associated with human traits

This publication in Cell Genomics outlines the design of the Infinium Methylation Screening Array (MSA) and illustrates how this newest innovation in array technology can be leveraged to make novel discoveries. The study established MSA as a highly accurate, scalable solution and revealed several interesting findings, one of which being that underappreciated 5-hydroxymethylcytosine plays a critical role in tissue identity, transcriptional regulation, and aging biomarkers.

Learn more about Infinium Methylation Screening Array

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Proteomics

Epigenomics

Genomics

Whole-genome sequencing of 490,640 UK Biobank participants

By compiling whole genome sequencing data from nearly 500K participants alongside phenotypic data, the UK Biobank is enabling researchers to unlock unprecedented insights into human health, disease, and genetic diversity. Researchers identified 1.5 billion variants using DRAGEN secondary analysis and have made these data available to researchers worldwide to accelerate drug discovery and advance precision medicine.

Learn more about large-scale Whole Genome Sequencing (WGS)

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Educational resources ​to learn more

Webinar On Demand
Proteomics in Rare Disease Research Studies
Webinar On Demand
Proteomics in Rare Disease Research Studies

Learn how Illumina Protein Prep (IPP) is being used by Prof. Matt Brown (Genomics England) for research studies in rare disease. Nithya Subramanian (Illumina R&D) presents an introduction to IPP, an NGS-based solution for proteomics.

Webinar On Demand 
The State of Multiomics & NGS
Webinar On Demand 
The State of Multiomics & NGS
Genetic Engineering News recently hosted this virtual summit featuring a speaker lineup of talented researchers from industry and academia discussing key topics including spatial proteomics, single-cell biology, spatial omics, and perspectives on the stunning pace of NGS technology advancement and progress in genomic medicine.
Webinar On Demand
Pioneer Multiomic Discovery with Illumina Innovations​
Webinar On Demand
Pioneer Multiomic Discovery with Illumina Innovations​
Illumina innovations are redefining the limits of next generation sequencing, enabling more insights, faster than ever. Listen in to the ABRF showcase where Emily Parker presents the power of multiomics.

Reach out to Illumina today

Let’s discuss your next multiomics project. 
Provide some brief details on what you would like to discuss with our experts.  An Illumina representative will reach out to you.
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